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Tuesday, August 27, 2013

Two nature protocols for RNA-seq analysis

One is from Simon Anders, his group wrote the DESeq

Count-based differential expression analysis of RNA sequencing data using R and Bioconductor

The other one 

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

I will go through a complete RNA-seq analysis following the guidelines.
There are other packages make RNA-seq analysis easier:

Lots of things are waiting for me to try out!

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