Creative Commons License
This blog by Tommy Tang is licensed under a Creative Commons Attribution-ShareAlike 4.0 International License.

My github papge

Wednesday, November 9, 2022

12 resources to bookmark for reproducible computational research

1. a reproducible workflow. https://www.youtube.com/watch?v=s3JldKoA0zw This two minute video will change your mind on reproducible research 

2. Parallel sequencing lives, or what makes large sequencing projects successful https://academic.oup.com/gigascience/article/6/11/gix100/4557140?login=false

3. Common-sense approaches to sharing tabular data alongside publication https://www.sciencedirect.com/science/article/pii/S2666389921002300

4. A Reproducible Data Analysis Workflow with R Markdown, Git, Make, and Docker https://psyarxiv.com/8xzqy/

5. Practical Computational Reproducibility in the Life Sciences https://www.cell.com/cell-systems/fulltext/S2405-4712(18)30140-6

6. A video by Dr.Keith A. Baggerly from MD Anderson [The Importance of Reproducible Research in High-Throughput Biology](https://www.youtube.com/watch?v=7gYIs7uYbMo) highly recommended.

7. Ten Simple Rules for Reproducible Computational Research http://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1003285)

8. Good Enough Practices in Scientific Computing http://arxiv.org/abs/1609.00037 

9. Best Practices for Scientific Computing https://journals.plos.org/plosbiology/article?id=10.1371/journal.pbio.1001745

10. A Quick Guide to Organizing Computational Biology Projects http://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.100042  A must read for computational biologists!

11. Reproducibility of computational workflows is automated using continuous analysis https://www.nature.com/articles/nbt.3780

12. Five selfish reasons to work reproducibly https://genomebiology.biomedcentral.com/articles/10.1186/s13059-015-0850-7

2 comments:

  1. <<<<<Investment is one of the best ways to achieve financial freedom. For a beginner there are so many challenges you face. It’s hard to know how to get started. Trading the Crypto market has really been a life changer for me. I almost gave up on crypto currency at some point not until I got a proficient trader Bernie Doran, he gave me all the information required to succeed in trading. I made more profit than I could ever imagine. I’m not here to converse much but to share my testimony, I invested $2000.00 and got back $21,500.00 within 5 days of investment. His strategies and signals are the best and I have gained more knowledge.
    If you are new to cryptocurrency. You can reach to him on Telegram: @BERNIE_FX
    Or through Email : Bernie.doranfx01@gmail.com

    ReplyDelete
  2. My words of advice to everyone out there, please have a proper insight before investing in these online cryptocurrency trading platforms and binary options. My co worker introduced me to one such platform where he had invested $300,000 which would generate $500,000 in 2 weeks. After much convincing from my work partner, I saw it as a lucrative opportunity and so I jumped on it and invested my $215,500 to earn $430,000 within the same period. I started noticing red flags when they asked my colleague to pay for such charges to facilitate the withdrawal process which was never successful. The same happened to me when my 2 weeks was due, By the time we realized it was a scam, they had already robbed us a total of $850,000. We opted to hire an investigator and a top hacking syndicate who took our case, and in three days, they had tracked the scammers and refunded our money. Contact them on spyhost@cyberdude .com

    ReplyDelete