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Friday, September 20, 2013

Genomic Interval Tree, Interval manipulation

we do a lot of work on overlapping genomic features.
Bedtool is a great tool for this kind of task, but sometimes I want to implement it with python
for some custom usage. I found many useful links below. I have to digest them to fully understand how the  tree is constructed.

I am by no means familiar with those algorithms.  Have a peek how other people do it, and learn from them is a good start for me.


1 comment:

  1. see here: