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Wednesday, October 19, 2022

12 web tools to explore genomics data


1. cbioportal https://cbioportal.org explore genomic datasets at the tips of your fingers
2. xena https://xena.ucsc.edu, a UCSC effort. Everyone needs to learn how to use UCSC genome browser https://genome.ucsc.edu
3. depmap portal https://lnkd.in/et3uDeci Cancer Cell Line Encyclopedia
4. TCGA RNA fusion portal https://tumorfusions.org
5. https://lnkd.in/e3P7td-w
6. Tumor Immune Syngeneic MOuse (TISMO) database http://tismo.cistrome.org
7. PDX models https://lnkd.in/ezby9kns
8. https://lnkd.in/ev6EUkwf Tumor Immune Dysfunction and Exclusion
9. http://timer.cistrome.org TIMER is a comprehensive resource for systematical analysis of immune infiltrates across diverse cancer types
10. genePattern https://genepattern.org
11. https://lnkd.in/ekFBdjfW
12. draw mutation for a protein https://lnkd.in/em8GmHQM

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