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Wednesday, January 24, 2018

ATACseq contamination of mycoplasma DNA

2 comments:

  1. Have you thought about using minimap2? It has a Python API (mappy) which you could use to iterate over a fastq file and quickly identify reads which map to one of the potential contaminant genomes.

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    Replies
    1. thanks for the information. I have not used minimap2 yet, fastq_screen seems to be doing OK for me.

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