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Monday, February 24, 2014

interactive visualization packages for R and python

I've been collecting potential packages for (interactive) visualization of Genomic data.
Here are the ones so far I've collected:

python:
Vispy http://vispy.org/gallery.html
pretty plotlib https://github.com/olgabot/prettyplotlib
D3py https://github.com/mikedewar/d3py
Yhat ggplot for python http://blog.yhathq.com/posts/ggplot-for-python.html
galry https://github.com/rossant/galry
Glue http://www.glueviz.org/en/latest/
Seaborn https://github.com/mwaskom/seaborn
Bokeh https://github.com/ContinuumIO/Bokeh

R:
Click me https://github.com/nachocab/clickme
plotly https://plot.ly/

others:
http://selection.datavisualization.ch/
Gpviz http://icbi.at/software/gpviz/gpviz.shtml
Jheatmap http://jheatmap.github.io/jheatmap/
Caleydo http://caleydo.github.io/caleydo-doc/3.1/index.html#!index.md

There are too many out there, I will need to focus on  one or two.

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