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My github papge

Wednesday, April 3, 2013

python packages for bioinformatics

HTSeq for high through put sequencing data
http://www-huber.embl.de/users/anders/HTSeq/doc/overview.html

Cogent
https://pypi.python.org/pypi/cogent

pygr
http://code.google.com/p/pygr/

pybedtools
http://pythonhosted.org/pybedtools/

TAMO for motif analysis
http://fraenkel.mit.edu/TAMO/TAMO_tutorial.html

Biopython
https://pypi.python.org/pypi/biopython/1.61

cruzdb
https://pypi.python.org/pypi/cruzdb/0.4

1 comment:

  1. update:
    https://github.com/chapmanb/bcbio-nextgen
    bx-python https://bitbucket.org/james_taylor/b...pts?at=default
    metaseq http://pythonhosted.org/metaseq/
    MISO http://genes.mit.edu/burgelab/miso/docs/index.html
    Nesoni for RNA-seq http://www.vicbioinformatics.com/nesoni-cookbook/#
    reditools https://code.google.com/p/reditools/
    blacktie for RNA-seq http://blacktie.readthedocs.org/en/latest/

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