tag:blogger.com,1999:blog-4376119613549496246.post1135741172710836455..comments2024-03-27T23:36:17.389-07:00Comments on Diving into Genetics and Genomics: Use tabix to extract subset of SAM, bed and VCF filestommyhttp://www.blogger.com/profile/04023008941349107659noreply@blogger.comBlogger4125tag:blogger.com,1999:blog-4376119613549496246.post-71705825441053612932021-11-01T22:48:50.714-07:002021-11-01T22:48:50.714-07:00All thanks to Mr Anderson for helping with my prof...All thanks to Mr Anderson for helping with my profits and making my fifth withdrawal possible. I'm here to share an amazing life changing opportunity with you. its called Bitcoin / Forex trading options. it is a highly lucrative business which can earn you as much as $2,570 in a week from an initial investment of just $200. I am living proof of this great business opportunity. If anyone is interested in trading on bitcoin or any cryptocurrency and want a successful trade without losing notify Mr Anderson now.Whatsapp: (+447883246472 )<br />Email: tdameritrade077@gmail.comMARGARET MAGOTHEhttps://www.blogger.com/profile/11818424528397171745noreply@blogger.comtag:blogger.com,1999:blog-4376119613549496246.post-14174471908284979872015-08-25T20:14:29.043-07:002015-08-25T20:14:29.043-07:00yes, I know that now :)yes, I know that now :)tommyhttps://www.blogger.com/profile/04023008941349107659noreply@blogger.comtag:blogger.com,1999:blog-4376119613549496246.post-6858770682834872542015-08-25T13:40:40.970-07:002015-08-25T13:40:40.970-07:00you can also use "samtools view yourbamfile.b...you can also use "samtools view yourbamfile.bam " with coords being optional quite similar to how a tabix indexed sam file would behavezxcvbnhttps://www.blogger.com/profile/09153095377018353120noreply@blogger.comtag:blogger.com,1999:blog-4376119613549496246.post-81632029774121292802013-05-17T11:38:38.924-07:002013-05-17T11:38:38.924-07:00the tbi file it downloaded was the index file it u...the tbi file it downloaded was the index file it uses to find the variants<br /><br />It should of also streamed the section vcf file to STDOUT and you will need to capture this in a file<br /><br />tabix -h ftp://ftp.1000genomes.ebi.ac.uk/vol1...notypes.vcf.gz 1:233411980-245804116 > myfile.vcf <br /><br />should give you a vcf file<br /><br />Its best to use the -h option from tabix as this gives you the header which is important for interpreting the file correctlytommyhttps://www.blogger.com/profile/04023008941349107659noreply@blogger.com